Live instances of the workshops can be launched in the cloud freely at http://app.orchestra.cancerdatasci.org/.
This website pulls the latest Docker image for each workshop (see below).
For each workshop, this table links to the
pkgdown website, the GitHub source repository, and the Docker image.
|iSEE: Interactive SummarizedExperiment Explorer|
|Trajectory inference across conditions: differential expression and differential progression|
|Seamless Integration of Mass Spectrometry Data from Different Sources with the Spectra Package|
|NewWave, new R package for dimensional reduction and batch effect removal for single cell RNA-seq data|
|SPEAQeasy: a Scalable Pipeline for Expression Analysis and Quantification for R/Bioconductor-powered RNA-seq analyses|
|Tidy transcriptomics for bulk and single-cell analyses|
|Quantitative analysis of ChiP-seq, ATAC-seq, and related DNA enrichment assays|
|preciseTAD: a machine-learning framework for predicting 3D domain boundaries using functional genomic elements|
|QFeatures EuroBioc2020 Workshop|
|Integrating ChIP-seq and RNA-seq data in R|
|Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment|
|Spatial Transcriptomics workflow using SpatialExperiment package|